Stephen W. Scherer

Dr. Stephen W. Scherer

Stephen Wayne 'Steve' Scherer, PhD, DSc, FRSC (born January 5, 1964), is a Canadian scientist, whose research has revolutionized the understanding of genetic variation in human disease. He obtained his PhD at the University of Toronto under Professor Lap-chee Tsui, discoverer of the cystic fibrosis gene. Together they founded Canada's first human genome centre, the Centre for Applied Genomics (TCAG) at the Hospital for Sick Children. He continues to serve as Director of the multi-million dollar TCAG, and is also Director of the McLaughlin Centre, a $100M initiative in genomic medicine at the University of Toronto Faculty of Medicine. His group has made several discoveries, documented in 300 publications and patents cited more than 20,000 times, positioning him as one of the most prolific scientists of his generation.[1][2][3] He founded the Database of Genomic Variants, which facilitates tens of thousands of clinical diagnoses each year. His philosophy in science and life is 'a goal equals an assist'; that is, advancing discovery or well being individually or through collaboration should be equally encouraged and valued.[4] He was quite possibly the first Canadian to have his genome sequenced, but has stated he hasn't had much time to look at the data yet.[5]

Contents

Contributions to Science

His pioneering discoveries led to the initial description of genome-wide copy number variations (CNVs) of genes and DNA, including defining CNV as a highly abundant form of human genetic variation. Previous theory held that humans were 99.9% DNA identical with the small difference in variation almost entirely accounted for by some 3 million single nucleotide polymorphisms (SNPs) per genome.[6][7][8] Larger genomic CNV changes involving losses or gains of thousands or millions of nucleotides encompassing hundreds of genes were thought to be exceptionally rare, and almost always involved in disease.[9] Dr. Scherer's discovery of frequent CNV events found in the genomes of all cells in every individual, co-published with Dr. Charles Lee of Harvard in 2004,[10] opened a new window for studies of natural genetic variation, evolution and disease. Scherer recalled, "when the scientific establishment didn't believe it, we knew we were on to something big. In retrospect, it's so simple to see these copy number variations were not at all biological outliers, just outliers of the scientific dogma of the time".[11]

Scherer and Lee and collaborators at the Wellcome Trust Sanger Institute (led by Drs. Nigel Carter and Matthew Hurles) then generated the first CNV maps of human DNA revealing the structural properties, mechanisms of formation, and population genetics of this previously unrecognized ubiquitous form of natural variation.[12][13] These studies were also the first to discover that CNVs number in the thousands per genome and encompass at least ten times more DNA letters than SNPs, revealing a 'dynamic patchwork' structure of chromosomes. These findings were further substantiated through work with J. Craig Venter's team,[14] which contributed to the completion of the first genome sequence of an individual.[15]

In the 2007-2010 period, Scherer and collaborators went on to discover numerous disease-associated CNVs, and the corresponding disease-susceptibility genes in upwards of 10% of individuals with autism spectrum disorder.[16][17][18] These discoveries have led to broadly available tests facilitating early diagnostic information for thousands of families with autism worldwide.[19][20][21][22][23][24][25]

Earlier (1988–2003) with Lap-chee Tsui, he led studies of human chromosome 7, in particular in the mapping phase of the Human Genome Project.[26][27][28][29] Through collaborative research, genes causative in holoprosencephaly,[30][31] renal carcinoma,[32] Williams syndrome,[33][34] sacral agenesis,[35] citrullinemia,[36] renal tubular acidosis,[37] and many others were identified. The sum of this work including contributions from scientists worldwide and J. Craig Venter's Celera Genomics, generated the first published description of human chromosome 7.[38] In other studies with Dr. Berge Minassian, disease genes causing deadly forms of epilepsy were identified,[39][40] immensely impacting the lives of families suffering from this devastating disease.[41]

Life and times

He was born the second son of four boys to Eduard Scherer (born March 17, 1937) and Margaret Louise Scherer (née Stuhlmueller; born August 20, 1937), in the working class neighborhood of Riverside in Windsor, Ontario. His brothers are Curtis Eduard Scherer (born April 21, 1961), Michael Allan Scherer (born July 15, 1967) and Robert Frank Scherer (born August 24, 1970). His parents remember his early years as being filled with days playing and exploring nature.[42] He attended Prince Edward Public School, Edith Cavell Junior High and Riverside Secondary School. He 'skipped' over grade 2, which "left him always having to work a bit harder or be a bit smarter to beat those who were a year older". He played competitive hockey and baseball winning numerous provincial and national championships. He said, "most of the battles he would face in life had already played out on the fields of Riverside".[43] He completed his Honors Science Degree at the University of Waterloo, Master's of Science and Doctor of Philosophy at the University of Toronto. A grade 8 teacher said he could be Prime Minister, whereas, a disgruntled University of Waterloo Professor was emphatic that he would amount to nothing. "The latter words had more impact", Scherer said in accepting the first Distinguished Science Alumni Award at the 50th Anniversary of the University of Waterloo. "Failure should be momentary and motivating".[44]

He married Sharon 'Jo-Anne' Herbrick (born March 13, 1972) on February 2, 2002 in the Timothy Eaton Memorial Church in Toronto. They reside in Swansea-Bloor West Village area of Toronto and Oak Lake, Kawartha region in Ontario with their children Josef Stephen Scherer (born April 4, 2004) and Julianna Margaret Scherer (born January 26, 2006).

Publications, media

Some 300 publications in the world's leading scientific journals like Nature, Science, Nature Genetics and the New England Journal of Medicine document his work. These discoveries have headlined in the New York Times, Globe and Mail, The Independent, South China News, as well as Time, Newsweek, CNN, Reader's Digest, Scientific American, The Walrus, the Harvard Business Review, Playboy, and many others. He appears regularly on the Canadian Broadcasting Corporation (CBC) and other national TV, radio, and media, including Quirks and Quarks, explaining scientific breakthroughs.[45][46][47][48][49] Some video interviews are at (http://www.youtube.com/watch?v=SdbVzkiC5dk&feature=related). He was recently featured in Roger Martin's book The Design of Business.[50] He has delivered lectures in over 50 countries. He has also put his hand into the film industry, serving as the scientific consultant for two documentaries including the MediCinema Film creation “Cracking the Code, the continuing saga of genetics,” and the Gemini Award-winning documentary, “After Darwin” by GalaFilms-Telefilm Canada.

Honors, awards, appointments

Professor Scherer holds the GlaxoSmithKline-Canadian Institutes of Health Research Chair in Genetics and Genomics at the Hospital for Sick Children and University of Toronto. He has won numerous honors such as: Canada's Top 40 under 40 Award (1999), Honorary Doctorate-University of Windsor (2001), Scholar of the Howard Hughes Medical Institute (2002), Genetics Society of Canada Scientist Award (2002), the Canadian Institute for Advanced Research Explorer Award (2002), the Steacie Prize in the Natural Sciences (2004), Fellow of the Royal Society of Canada (2007) and the inaugural Distinguished Science Alumni Award-University of Waterloo (2007). He is on the Scientific Advisory Board of Autism Speaks, the Board of Trustees of Genome Canada and the international Human Genome Organization, and is a Scholar of the Canadian Institute for Advanced Research. He won the $5 million Premier's Summit Award for Medical Research (2008) for his "seminal contributions in redefining our understanding of genetic variation and disease studies". He was also recognized as a Significant Sigma Chi in 2011 [51].

Trainees

Hundreds of students, clinicians, and scientists have trained with his team with alumni holding clinical, academic or government appointments including Drs. Danielle Andrade (Toronto), Elena Belloni (Milan), Andrew Boright (Toronto), Andrew Carson (San Diego), Sanaa Choufani (Toronto), Brian Chung (Hong Kong), Paromita Deb-Rinker (Ottawa), Bridget Fernandez (St. John's), Lars Feuk (Uppsala), Konstanze Fischer (Ulm), Shiniche Horike (Yonago), Layla Katiraee (San Francisco), Hameed Khan (St. John's), Ron Lebofsky (Boston), Dina Ianzano (Bologna), Dorota Kwasnicka-Crawford (Toronto), Hannes Lohi (Helsinki), Christian Marshall (Toronto), Katerina Michalickova (Oslo), Berge Minassian (Toronto), Rainald Moessner (Wurzberg), Kazuhiko Nakabayashi (Tokyo), Kohji Okamura (Tokyo), Lucy Osborne (Toronto), Erwin Petek (Graz), Eul-Ju Seo (Seoul), Mohammad Mahdi Ghahramani Seno (Shiraz), Giovanni Traverso (Boston), John Vincent (Toronto) and Takahiro Yamada (Hokkaido). Other professional alumni include Elayne Chan (biotechnology, Boston), Dean Sas (business, New York), Jonathan Grover (business, San Francisco), Aabed Meer (medicine, Stanford), David Alpay (actor), and others.

A full list of current staff and alumni can be found on the TCAG website.

References

  1. ^ Geneticist honoured. Discovery of epilepsy gene puts researcher in elite group. May 10th, 2000. Windsor Star.
  2. ^ My Mail. Stephen Scherer. March 15th, 2007. Toronto Star.
  3. ^ In Profile: Stephen Scherer. February 2010. University of Toronto Faculty of Medicine Magazine.
  4. ^ Steacie Prize Award Address. June 11, 2004 Steacie Institute, National Research Council, Ottawa.
  5. ^ Science at the summit. A panel discussion on medical research with Premier's Summit Award winners Stephen Scherer, Frances Shepherd, John Dick and Tak Mak (moderated by David Naylor). May 27, 2008. CBC radio 'Ideas' with Paul Kennedy.
  6. ^ Patchwork people. October 20th, 2005. Nature.
  7. ^ Study turns human genetics on its head. November 23rd, 2006. Globe and Mail.
  8. ^ The changing face of DNA. November 2007. Howard Hughes Medical Institute Bulletin.
  9. ^ DNA deletions and duplications help determine health. September 7th, 2007. Science.
  10. ^ Iafrate et al. Detection of large-scale variation in the human genome. 2004. Nature Genetics 36, 949-951.
  11. ^ Conversation. Two leading researchers discuss the value of oddball data. November 2009. An interview with Stephen Scherer and Roger Martin. Harvard Business Review.
  12. ^ Redon et al. Global variation in copy number in the human genome. 2006. Nature 444, 444-454.
  13. ^ Conrad et al. Origins and functional impact of copy number variation in the human genome. 2009. Nature 464, 704-12.
  14. ^ Khaja et al. Genome assembly comparison to identify structural variants in the human genome. 2006. Nature Genetics 38, 1413-1418
  15. ^ Levy et al. The diploid genome sequence of an individual human. 2007. PLoS Biology 5, e254
  16. ^ Autism Genome Project, Szatmari et al. Mapping autism risk loci using genetic linkage and chromosomal rearrangements. 2007. Nature Genetics 39, 319-328
  17. ^ Marshall et al. Structural variation of chromosomes in autism spectrum disorder. 2008. American Journal of Human Genetics 82, 477-88
  18. ^ Pinto et al. Functional impact of global rare copy number variation in autism spectrum disorders. 2010. Nature June 9.
  19. ^ Berkel et al. Mutations in the SHANK2 synaptic scaffolding gene in autism spectrum disorder and mental retardation. 2010. Nature Genetics 42, 489-91
  20. ^ Noor et al. Disruption at the PTCHD1 Locus on Xp22.11 in Autism spectrum disorder and intellectual disability. 2010. Science Translational Medicine 2, 49ra68
  21. ^ Canadian breakthrough offers hope on autism. February 19th, 2007. Globe and Mail
  22. ^ Solving puzzle of son's autism soothes family. January 18th, 2008. Toronto Star
  23. ^ Researchers discover genetic patterns of autism. June 9th, 2010. Time Magazine
  24. ^ Genetic finding paves way for controversial autism testing. June 10th, 2010. Globe and Mail
  25. ^ Autism genetics: A breakthrough that sheds light on a medical mystery. June 10th, 2010. The Independent
  26. ^ The treasures of chromosome 7. Autumn 2001. The University of Toronto Magazine
  27. ^ Canadian scientists discover giant gene. February 10th, 2001. Globe and Mail
  28. ^ Walking the jungles and deserts of chromosome 7. September 2003. Howard Hughes Medical Institute Bulletin
  29. ^ Milestones in Canadian Health Research; Decoding life. 2010. Canadian Institutes of Health Research
  30. ^ Belloni et al. Identification of Sonic hedgehog as a candidate gene responsible for holoprosencephaly. 1996. Nature Genetics 14, 353-356
  31. ^ Roessler et al. Mutations in the human Sonic Hedgehog gene cause holoprosencephaly. 1996. Nature Genetics 14, 357-360
  32. ^ Schmidt et al. Germline and somatic mutations in the tyrosine kinase domain of the MET proto-oncogene in papillary renal carcinomas. 1997. Nature Genetics 16, 68-73
  33. ^ Osborne et al. A 1.5 million base pair inversion polymorphism in families with Williams-Beuren syndrome. 2001. Nature Genetics 29, 321-325
  34. ^ Sommerville et al. Severe expressive-language delay related to duplication of the Williams-Beuren Locus. 2005. New England Journal of Medicine 353, 1694-1701
  35. ^ Ross et al. A homeobox gene, HLXB9, is the major locus for dominantly inherited sacral agenesis. 1998. Nature Genetics 20, 358-361
  36. ^ Kobayashi et al. The gene mutated in adult-onset type II citrullinaemia encodes a putative mitochondrial carrier protein. 1999. Nature Genetics 22, 159-163
  37. ^ Smith et al. Mutations in ATP6N1B, encoding a new kidney vacuolar proton pump 116-kD subunit, cause recessive distal renal tubular acidosis with preserved hearing. 2000. Nature Genetics 26, 71-75
  38. ^ Scherer et al. Chromosome 7: DNA Sequence and Biology. 2003. Science 300, 767-772
  39. ^ Minassian et al. Mutations in a gene encoding a novel protein tyrosine phosphatase cause progressive myoclonus epilepsy. 1998. Nature Genetics 20, 171-174
  40. ^ Chan et al. Mutations in NHLRC1 cause progressive myoclonus epilepsy. 2003. Nature Genetics 35, 125-127
  41. ^ Gene hunters race against Lafora curse. September 27th, 2003. National Post
  42. ^ Codebuster. November 7th, 1998. Windsor Star.
  43. ^ A Common Humanity. Convocation Address. June 9, 2001. Address to the graduating class of the Faculty of Sciences and Engineering, University of Windsor.
  44. ^ A prepared mind. September 27, 2007. Inaugural Distinguished Alumni Award Address, Faculty of Science, University of Waterloo.
  45. ^ The human genome, and Pandora's box. Counterpoint: an interview with Margaret Wente. June 29th, 2000. Globe and Mail.
  46. ^ Scherer, S. By knowing our genomes, we will begin to truly know ourselves. Commentary August 7th, 2007. Globe and Mail.
  47. ^ Scherer, S. Perfect genomics. Question of the Year 2007. Nature Genetics.
  48. ^ Scherer, S. 25 great ideas from great minds. January 4, 2007. Toronto Star.
  49. ^ Brainwashed. Rethinking man's genetic makeup. November 2010, The Walrus.
  50. ^ The reliability bias in The Design of Business. Roger Martin. Harvard Business Press.
  51. ^ http://www.sigmachi.org/2011significantsigs.html